=========
Tutorials
=========

These `Jupyter Notebooks <https://jupyter.org/>`_ illustrate how the
Vivarium *E. coli* project can be used. You can click on a notebook
below to view a static rendering of the notebook's code and output, or
you can download and execute the notebook yourself. These notebooks can
be found under `notebooks/ on GitHub
<https://github.com/CovertLab/vivarium-ecoli/tree/master/notebooks>`_.

.. toctree::
   :maxdepth: 2

   notebooks/Vivarium_ecoli_processes
   notebooks/Vivarium_ecoli_composites
   notebooks/allocation_processes
   notebooks/ecoli_simulations
   notebooks/colony_simulations