`ecoli.library.cell_wall.hole_detection`

class ecoli.library.cell_wall.hole_detection.HoleSizeDict(data=None)[source]

Bases: MutableMapping

get_containing_hole(hole)[source]

get_depth()[source]

max()[source]

merge(holes)[source]

prune_subtree(root)[source]

ecoli.library.cell_wall.hole_detection.detect_holes(lattice, on_cylinder=True, critical_size=None, prune_subtrees=True)[source]

ecoli.library.cell_wall.hole_detection.detect_holes_skimage(lattice, on_cylinder=True)[source]

ecoli.library.cell_wall.hole_detection.main()[source]

ecoli.library.cell_wall.hole_detection.run_test_case(side_length, density, rng=Generator(PCG64) at 0x7F7D76B29620)[source]