ecoli.plots.ecoli_spatial_plots

ecoli.plots.ecoli_spatial_plots.array_from(d)

ecoli.plots.ecoli_spatial_plots.array_to(keys, array)

ecoli.plots.ecoli_spatial_plots.check_fig_pickle(path)

ecoli.plots.ecoli_spatial_plots.plot_NT_availability(avg_NT_per_ribosome)

Note that ribosomes are allowed to overlap with each other in wcEcoli, which is why this is an important analysis to look at. The average footprint of ribosomes in E. coli on mRNA is assumed to be about 25 on average with a range of 15-40 NT.

• Ref: Mohammad et al., eLife (2019)

ecoli.plots.ecoli_spatial_plots.plot_bulk_molecules(rp, dc, dc_no_mesh, mesh_size)

ecoli.plots.ecoli_spatial_plots.plot_large_molecules(output, mol_ids, mesh_size, nodes)

ecoli.plots.ecoli_spatial_plots.plot_molecule_characterizations(ecoli, initial_config)

ecoli.plots.ecoli_spatial_plots.plot_nucleoid_diff(output, nodes, polyribosome_assumption)

ecoli.plots.ecoli_spatial_plots.plot_polyribosomes(rp, radii, dc, dc_no_mesh, total_molecules, mesh_size, polyribosome_assumption)

ecoli.plots.ecoli_spatial_plots.plot_polyribosomes_diff(output, mesh_size, nodes, filename)

ecoli.plots.ecoli_spatial_plots.plot_single_molecule_diff(output, mol_id, mesh_size, nodes)