ecoli.processes.rna_interference

RNA Interference

Treats sRNA-mRNA binding as complexation events that create duplexes and free bound ribosomes. Decreases ompF translation during micF overexpression.

class ecoli.processes.rna_interference.RnaInterference(parameters=None)

Bases: Process

defaults: Dict[str, Any]

{   'binding_probs': [],
    'duplex_ids': [],
    'emit_unique': False,
    'ribosome30S': 'ribosome30S',
    'ribosome50S': 'ribosome50S',
    'seed': 0,
    'srna_ids': [],
    'target_tu_ids': [],
    'time_step': 2}

name = 'ecoli-rna-interference'

next_update(timestep, states)

ports_schema()

topology

{   'RNAs': ('unique', 'RNA'),
    'active_ribosome': ('unique', 'active_ribosome'),
    'bulk': ('bulk',)}

ecoli.processes.rna_interference.main()