ecoli.processes.listeners.rnap_data

RNAP Data Listener

class ecoli.processes.listeners.rnap_data.RnapData(parameters=None)

Bases: Step

Listener for RNAP data.

defaults: Dict[str, Any]

{   'cistron_ids': [],
    'cistron_tu_mapping_matrix': [],
    'emit_unique': False,
    'stable_RNA_indexes': [],
    'time_step': 1}

name = 'rnap_data_listener'

next_update(timestep, states)

ports_schema()

topology

{   'RNAs': ('unique', 'RNA'),
    'active_RNAPs': ('unique', 'active_RNAP'),
    'active_ribosomes': ('unique', 'active_ribosome'),
    'global_time': ('global_time',),
    'listeners': ('listeners',),
    'next_update_time': ('next_update_time', 'rnap_data_listener'),
    'timestep': ('timestep',)}

update_condition(timestep, states)

See update_condition().