reconstruction.ecoli

• reconstruction.ecoli.compendium
  • reconstruction.ecoli.compendium.growth_data
• reconstruction.ecoli.dataclasses
  • reconstruction.ecoli.dataclasses.process
    • reconstruction.ecoli.dataclasses.process.chromosome_structure
    • reconstruction.ecoli.dataclasses.process.complexation
    • reconstruction.ecoli.dataclasses.process.equilibrium
    • reconstruction.ecoli.dataclasses.process.metabolism
    • reconstruction.ecoli.dataclasses.process.process
    • reconstruction.ecoli.dataclasses.process.replication
    • reconstruction.ecoli.dataclasses.process.rna_decay
    • reconstruction.ecoli.dataclasses.process.transcription
    • reconstruction.ecoli.dataclasses.process.transcription_regulation
    • reconstruction.ecoli.dataclasses.process.translation
    • reconstruction.ecoli.dataclasses.process.two_component_system
  • reconstruction.ecoli.dataclasses.state
    • reconstruction.ecoli.dataclasses.state.bulkMolecules
    • reconstruction.ecoli.dataclasses.state.external_state
    • reconstruction.ecoli.dataclasses.state.internal_state
    • reconstruction.ecoli.dataclasses.state.stateFunctions
    • reconstruction.ecoli.dataclasses.state.uniqueMolecules
  • reconstruction.ecoli.dataclasses.adjustments
  • reconstruction.ecoli.dataclasses.common_names
  • reconstruction.ecoli.dataclasses.constants
  • reconstruction.ecoli.dataclasses.getter_functions
  • reconstruction.ecoli.dataclasses.growth_rate_dependent_parameters
  • reconstruction.ecoli.dataclasses.molecule_groups
  • reconstruction.ecoli.dataclasses.molecule_ids
  • reconstruction.ecoli.dataclasses.relation
• reconstruction.ecoli.flat
• reconstruction.ecoli.scripts
  • reconstruction.ecoli.scripts.fold_changes
    • reconstruction.ecoli.scripts.fold_changes.calculate_fc
  • reconstruction.ecoli.scripts.metabolism_kinetics
    • reconstruction.ecoli.scripts.metabolism_kinetics.convert_to_flat
  • reconstruction.ecoli.scripts.metabolite_concentrations
    • reconstruction.ecoli.scripts.metabolite_concentrations.convert_to_flat
    • reconstruction.ecoli.scripts.metabolite_concentrations.merge_files
  • reconstruction.ecoli.scripts.protein_half_lives
    • reconstruction.ecoli.scripts.protein_half_lives.convert_to_flat
  • reconstruction.ecoli.scripts.rna_half_lives
    • reconstruction.ecoli.scripts.rna_half_lives.convert_to_flat
  • reconstruction.ecoli.scripts.update_biocyc_files

• reconstruction.ecoli.fit_sim_data_1
• reconstruction.ecoli.knowledge_base_raw
• reconstruction.ecoli.simulation_data