Source code for reconstruction.ecoli.dataclasses.molecule_ids

"""
SimulationData moleculeIds
"""


[docs] class MoleculeIds(object): """ Helper class to extract molecule IDs of "special" molecules. All values returned are strings. """ def __init__(self, raw_data, sim_data): self._buildMoleculeIds()
[docs] def _buildMoleculeIds(self): molecule_ids = { "full_RNAP": "APORNAP-CPLX[c]", "s30_full_complex": "CPLX0-3953[c]", "s50_full_complex": "CPLX0-3962[c]", "DnaA": "PD03831[c]", "DnaA_ATP_complex": "MONOMER0-160[c]", "LPS": "CPD0-939[c]", "murein": "CPD-12261[p]", "glycogen": "glycogen-monomer[c]", "ppGpp": "GUANOSINE-5DP-3DP[c]", "oriC_site": "G0-10506", "terC_site": "TERC", "RelA": "RELA-MONOMER[c]", "SpoT": "SPOT-MONOMER[c]", "water": "WATER[c]", "proton": "PROTON[c]", "ppi": "PPI[c]", "full_chromosome": "CHROM_FULL[c]", } self.__dict__.update(molecule_ids)