Source code for wholecell.utils.sparkline

"""
Utility functions for generating sparkline plots
"""

import numpy as np



[docs]
def whitePadSparklineAxis(axis, xAxis=True, secondary=False):
    axis.spines["right"].set_visible(secondary)
    axis.spines["top"].set_visible(False)
    axis.spines["left"].set_position(("outward", 10))
    axis.spines["right"].set_position(("outward", 10))
    axis.spines["bottom"].set_position(("outward", 10))
    axis.set_yticks(axis.get_ylim())
    axis.set_xticks(axis.get_xlim())
    axis.tick_params(which="both", direction="out", right=secondary, top=False)

    if not xAxis:
        axis.spines["bottom"].set_visible(False)
        axis.tick_params(bottom=False)
        axis.tick_params(axis="x", labelbottom=False)




[docs]
def simpleSparklineAxis(axis):
    axis.spines["top"].set_visible(False)
    axis.spines["bottom"].set_visible(False)
    axis.xaxis.set_ticks_position("none")
    axis.tick_params(which="both", direction="out")




[docs]
def sparklineAxis(axis, x, y, tickPos, lineType, color):
    axis.plot(x, y, linestyle=lineType, drawstyle="steps", color=color, linewidth=2)
    axis.spines["top"].set_visible(False)
    axis.spines["bottom"].set_visible(False)
    axis.yaxis.set_ticks_position(tickPos)
    axis.xaxis.set_ticks_position("none")
    axis.tick_params(which="both", direction="out")

    for tl in axis.get_yticklabels():
        tl.set_color(color)




[docs]
def setAxisMaxMinY(axis, data):
    if np.isnan(data).all():
        return

    ymax = np.nanmax(data)
    ymin = 0
    if ymin == ymax:
        axis.set_yticks([ymin])
    else:
        axis.set_yticks([ymin, ymax])




[docs]
def setAxisMaxMinX(axis, data):
    if np.isnan(data).all():
        return

    xmax = np.nanmax(data)
    xmin = 0
    if xmin == xmax:
        axis.set_xticks([xmin])
    else:
        axis.set_xticks([xmin, xmax])