Source code for ecoli.variants.condition

from typing import Any, TYPE_CHECKING

if TYPE_CHECKING:
    from reconstruction.ecoli.simulation_data import SimulationDataEcoli


[docs] def apply_variant( sim_data: "SimulationDataEcoli", params: dict[str, Any] ) -> "SimulationDataEcoli": """ Modify sim_data to environmental condition from condition_defs.tsv. Args: sim_data: Simulation data to modify params: Parameter dictionary of the following format:: { # Environmental condition: "basal", "with_aa", "acetate", # "succinate", "no_oxygen" "condition": str, } Returns: Simulation data with the following attributes modified:: sim_data.condition sim_data.external_state.current_timeline_id """ # Set media condition sim_data.condition = params["condition"] sim_data.external_state.current_timeline_id = params["condition"] sim_data.external_state.saved_timelines[params["condition"]] = [ (0, sim_data.conditions[params["condition"]]["nutrients"]) ] return sim_data