ecoli.variants.condition

ecoli.variants.condition.apply_variant(sim_data, params)

Modify sim_data to environmental condition from condition_defs.tsv.

Parameters:

• sim_data (SimulationDataEcoli) – Simulation data to modify

• params (dict[str, Any]) –

  Parameter dictionary of the following format:

  {
      # Environmental condition: "basal", "with_aa", "acetate",
      # "succinate", "no_oxygen"
      "condition": str,
  }
  

Returns:

Simulation data with the following attributes modified:

sim_data.condition
sim_data.external_state.current_timeline_id

Return type:

SimulationDataEcoli