ecoli.experiments.metabolism_exchanger

Metabolism using user-friendly FBA

class ecoli.experiments.metabolism_exchanger.MetabolismExchange(config=None)

Bases: Composer

defaults: Dict[str, Any]

{   'exchanger': {},
    'metabolism': {'kinetic_rates': []},
    'seed': 0,
    'sim_data_path': '/home/runner/work/vEcoli/vEcoli/reconstruction/sim_data/kb/simData.cPickle'}

generate_processes(config)

generate_topology(config)

ecoli.experiments.metabolism_exchanger.run_metabolism()

ecoli.experiments.metabolism_exchanger.run_metabolism_composite()