reconstruction

• reconstruction.ecoli
  • reconstruction.ecoli.compendium
    • reconstruction.ecoli.compendium.growth_data
  • reconstruction.ecoli.dataclasses
    • reconstruction.ecoli.dataclasses.process
      • reconstruction.ecoli.dataclasses.process.chromosome_structure
      • reconstruction.ecoli.dataclasses.process.complexation
      • reconstruction.ecoli.dataclasses.process.equilibrium
      • reconstruction.ecoli.dataclasses.process.metabolism
      • reconstruction.ecoli.dataclasses.process.process
      • reconstruction.ecoli.dataclasses.process.replication
      • reconstruction.ecoli.dataclasses.process.rna_decay
      • reconstruction.ecoli.dataclasses.process.transcription
      • reconstruction.ecoli.dataclasses.process.transcription_regulation
      • reconstruction.ecoli.dataclasses.process.translation
      • reconstruction.ecoli.dataclasses.process.two_component_system
    • reconstruction.ecoli.dataclasses.state
      • reconstruction.ecoli.dataclasses.state.bulkMolecules
      • reconstruction.ecoli.dataclasses.state.external_state
      • reconstruction.ecoli.dataclasses.state.internal_state
      • reconstruction.ecoli.dataclasses.state.stateFunctions
      • reconstruction.ecoli.dataclasses.state.uniqueMolecules
    • reconstruction.ecoli.dataclasses.adjustments
    • reconstruction.ecoli.dataclasses.common_names
    • reconstruction.ecoli.dataclasses.constants
    • reconstruction.ecoli.dataclasses.getter_functions
    • reconstruction.ecoli.dataclasses.growth_rate_dependent_parameters
    • reconstruction.ecoli.dataclasses.molecule_groups
    • reconstruction.ecoli.dataclasses.molecule_ids
    • reconstruction.ecoli.dataclasses.relation
  • reconstruction.ecoli.scripts
    • reconstruction.ecoli.scripts.fold_changes
      • reconstruction.ecoli.scripts.fold_changes.calculate_fc
    • reconstruction.ecoli.scripts.metabolism_kinetics
      • reconstruction.ecoli.scripts.metabolism_kinetics.convert_to_flat
    • reconstruction.ecoli.scripts.metabolite_concentrations
      • reconstruction.ecoli.scripts.metabolite_concentrations.convert_to_flat
      • reconstruction.ecoli.scripts.metabolite_concentrations.merge_files
    • reconstruction.ecoli.scripts.protein_half_lives
      • reconstruction.ecoli.scripts.protein_half_lives.convert_to_flat
    • reconstruction.ecoli.scripts.rna_half_lives
      • reconstruction.ecoli.scripts.rna_half_lives.convert_to_flat
    • reconstruction.ecoli.scripts.update_biocyc_files
  • reconstruction.ecoli.fit_sim_data_1
  • reconstruction.ecoli.knowledge_base_raw
  • reconstruction.ecoli.simulation_data
• reconstruction.tests
  • reconstruction.tests.test_fit_sim_data_1
  • reconstruction.tests.test_spreadsheets

• reconstruction.spreadsheets