ecoli.analysis

• ecoli.analysis.antibiotics_colony
  • ecoli.analysis.antibiotics_colony.amp_plots
  • ecoli.analysis.antibiotics_colony.exploration
  • ecoli.analysis.antibiotics_colony.load_data
  • ecoli.analysis.antibiotics_colony.metrics
  • ecoli.analysis.antibiotics_colony.plot
  • ecoli.analysis.antibiotics_colony.plot_utils
  • ecoli.analysis.antibiotics_colony.snapshot_and_hist_plot
  • ecoli.analysis.antibiotics_colony.spatial_correlation
  • ecoli.analysis.antibiotics_colony.tet_dry_mass
  • ecoli.analysis.antibiotics_colony.timeseries
  • ecoli.analysis.antibiotics_colony.validation
• ecoli.analysis.causality_network
  • ecoli.analysis.causality_network.buildCausalityNetwork
  • ecoli.analysis.causality_network.build_network
  • ecoli.analysis.causality_network.network_components
  • ecoli.analysis.causality_network.read_dynamics
• ecoli.analysis.colony
  • ecoli.analysis.colony.snapshots
• ecoli.analysis.multidaughter
• ecoli.analysis.multiexperiment
• ecoli.analysis.multigeneration
  • ecoli.analysis.multigeneration.new_gene_counts
  • ecoli.analysis.multigeneration.replication
  • ecoli.analysis.multigeneration.ribosome_components
  • ecoli.analysis.multigeneration.ribosome_crowding
  • ecoli.analysis.multigeneration.ribosome_production
  • ecoli.analysis.multigeneration.ribosome_usage
  • ecoli.analysis.multigeneration.rna_decay_03_high
• ecoli.analysis.multiseed
  • ecoli.analysis.multiseed.ecocyc_table
  • ecoli.analysis.multiseed.protein_counts_validation
  • ecoli.analysis.multiseed.ribosome_spacing
  • ecoli.analysis.multiseed.subgenerational_expression_table
• ecoli.analysis.multivariant
  • ecoli.analysis.multivariant.average_monomer_counts
  • ecoli.analysis.multivariant.cell_mass
  • ecoli.analysis.multivariant.doubling_time_hist
  • ecoli.analysis.multivariant.doubling_time_line
  • ecoli.analysis.multivariant.dummy
  • ecoli.analysis.multivariant.new_gene_translation_efficiency_heatmaps
• ecoli.analysis.single
  • ecoli.analysis.single.blame
  • ecoli.analysis.single.mass_fraction_summary