wholecell.utils
- class wholecell.utils.ForkedPdb(completekey=None, stdin=None, stdout=None, context=5, **kwargs)[source]
Bases:
Pdb
Usage:
from wholecell.utils import ForkedPdb ForkedPdb().set_trace() ========== Don’t forget to actually instantiate an instance of ForkedPdb when calling set_trace()
Note: Python 3 has a global function breakpoint().
Create a new IPython debugger.
- param completekey:
Passed to pdb.Pdb.
- type completekey:
default None
- param stdin:
Passed to pdb.Pdb.
- type stdin:
default None
- param stdout:
Passed to pdb.Pdb.
- type stdout:
default None
- param context:
Number of lines of source code context to show when displaying stacktrace information.
- type context:
int
- param **kwargs:
Passed to pdb.Pdb.
Notes
The possibilities are python version dependent, see the python docs for more info.
wholecell.utils.build_ode
wholecell.utils.constants
wholecell.utils.data
wholecell.utils.dependency_graph
wholecell.utils.fast_nonnegative_least_squares
wholecell.utils.filepath
wholecell.utils.fitting
wholecell.utils.forkedPdb
wholecell.utils.make_media
wholecell.utils.mc_complexation
wholecell.utils.memory_debug
wholecell.utils.modular_fba
wholecell.utils.parallelization
wholecell.utils.plotting_tools
wholecell.utils.polymerize
wholecell.utils.profiler
wholecell.utils.protein_counts
wholecell.utils.random
wholecell.utils.sparkline
wholecell.utils.spatial_tool
wholecell.utils.test_parallelization
wholecell.utils.toya
wholecell.utils.unit_struct_array
wholecell.utils.units
wholecell.utils.voronoi_plot_main