wholecell.utils
- class wholecell.utils.ForkedPdb(completekey=None, stdin=None, stdout=None, context=5, **kwargs)[source]
- Bases: - Pdb- Usage:- from wholecell.utils import ForkedPdb ForkedPdb().set_trace() ========== Don’t forget to actually instantiate an instance of ForkedPdb when calling set_trace() - Note: Python 3 has a global function breakpoint(). - Create a new IPython debugger. - param completekey:
- Passed to pdb.Pdb. 
- type completekey:
- default None 
- param stdin:
- Passed to pdb.Pdb. 
- type stdin:
- default None 
- param stdout:
- Passed to pdb.Pdb. 
- type stdout:
- default None 
- param context:
- Number of lines of source code context to show when displaying stacktrace information. 
- type context:
- int 
- param **kwargs:
- Passed to pdb.Pdb. 
 - Notes - The possibilities are python version dependent, see the python docs for more info. 
- wholecell.utils.build_ode
- wholecell.utils.constants
- wholecell.utils.data
- wholecell.utils.dependency_graph
- wholecell.utils.fast_nonnegative_least_squares
- wholecell.utils.filepath
- wholecell.utils.fitting
- wholecell.utils.forkedPdb
- wholecell.utils.make_media
- wholecell.utils.mc_complexation
- wholecell.utils.memory_debug
- wholecell.utils.modular_fba
- wholecell.utils.parallelization
- wholecell.utils.plotting_tools
- wholecell.utils.polymerize
- wholecell.utils.profiler
- wholecell.utils.protein_counts
- wholecell.utils.random
- wholecell.utils.sparkline
- wholecell.utils.spatial_tool
- wholecell.utils.test_parallelization
- wholecell.utils.toya
- wholecell.utils.unit_struct_array
- wholecell.utils.units
- wholecell.utils.voronoi_plot_main