ecoli.analysis.antibiotics_colony.amp_plots

ecoli.analysis.antibiotics_colony.amp_plots.agent_summary(data, var_summarizers)

ecoli.analysis.antibiotics_colony.amp_plots.amp_conc_sweep(glc_data, amp_data, add_amp_data, ax=None)

ecoli.analysis.antibiotics_colony.amp_plots.ampicillin_pca(data, vars, var_summarizers={}, outcome='Died', counts_to_conc=True, ax=None)

ecoli.analysis.antibiotics_colony.amp_plots.cli()

ecoli.analysis.antibiotics_colony.amp_plots.hist_by_death_plot(data, var, var_summarize=<function <lambda>>, counts_to_conc=True, ax=None, xlabel=None)

ecoli.analysis.antibiotics_colony.amp_plots.hour_scale_plot(data, var, highlight_lineage=None, ax=None, to_conc=False, mark_death=True)

ecoli.analysis.antibiotics_colony.amp_plots.load_data(glc_data, amp_data, verbose=False)

ecoli.analysis.antibiotics_colony.amp_plots.logistic_explain_death(data, outcome='Died', test_size=0.3, random_state=None)

ecoli.analysis.antibiotics_colony.amp_plots.main()

ecoli.analysis.antibiotics_colony.amp_plots.make_figures(amp_data, verbose, as_svg=False, outdir='out/analysis/paper_figures/figure_4/')

ecoli.analysis.antibiotics_colony.amp_plots.minute_scale_plot(data, var, dt=5, highlight_lineage=None, ax=None, to_conc=False)

ecoli.analysis.antibiotics_colony.amp_plots.pairplot(data, variable_transform_map={}, hue='Died')

ecoli.analysis.antibiotics_colony.amp_plots.timeseries_death_plot(data, var, highlight_lineage=None, ax=None)