ecoli.analysis.antibiotics_colony.load_data

ecoli.analysis.antibiotics_colony.load_data.agent_data_table(raw_data, paths_dict, condition, seed)

Combine data from all agents into DataFrames for each timestep.

Parameters:

• raw_data – Tuple of (time, dictionary at time for one replicate).

• paths_dict – Dictionary mapping paths within each agent to names that will be used the keys in the returned dictionary.

• condition – String identifier for experimental condition

• seed – Initial seed for this replicate

Returns:

Dataframe where each column is a path and each row is an agent.

ecoli.analysis.antibiotics_colony.load_data.deserialize_and_remove_units(d)

ecoli.analysis.antibiotics_colony.load_data.load_data(experiment_id=None, cpus=8, sampling_rate=2, host='10.138.0.75', port=27017)

ecoli.analysis.antibiotics_colony.load_data.main()