ecoli.analysis.multigeneration.replication

The multigeneration analysis method replication 1. Record the DNA polymerase position vs time 2. Record # of pairs of replication forks 3. Record the factors of critical initial mass and dry mass 4. Record # of oriC

ecoli.analysis.multigeneration.replication.plot(params, conn, history_sql, config_sql, success_sql, sim_data_dict, validation_data_paths, outdir, variant_metadata, variant_names)

Create comprehensive replication visualization plots for E. coli simulation data.

Parameters:

• params (dict[str, Any])

• conn (DuckDBPyConnection)

• history_sql (str)

• config_sql (str)

• success_sql (str)

• sim_data_dict (dict[str, dict[int, str]])

• validation_data_paths (list[str])

• outdir (str)

• variant_metadata (dict[str, dict[int, Any]])

• variant_names (dict[str, str])