ecoli.analysis.multigeneration.ribosome_production

ecoli.analysis.multigeneration.ribosome_production.calc_rna_doubling_time(produced_col, count_col, borderline)

Calculate rRNA doubling time with sanitation.

Parameters:

• produced_col (str)

• count_col (str)

• borderline (float)

Return type:

Expr

ecoli.analysis.multigeneration.ribosome_production.plot(params, conn, history_sql, config_sql, success_sql, sim_data_dict, validation_data_paths, outdir, variant_metadata, variant_names)

Visualize ribosome production metrics for E. coli simulation.

Parameters:

• params (dict[str, Any])

• conn (DuckDBPyConnection)

• history_sql (str)

• config_sql (str)

• success_sql (str)

• sim_data_dict (dict[str, dict[int, str]])

• validation_data_paths (list[str])

• outdir (str)

• variant_metadata (dict[str, dict[int, Any]])

• variant_names (dict[str, str])