ecoli.analysis.multigeneration.rna_decay_03_high

Plot dynamic traces of genes with high expression (> 20 counts of mRNA)

EG10367_RNA 24.8 gapA Glyceraldehyde 3-phosphate dehydrogenase EG11036_RNA 25.2 tufA Elongation factor Tu EG50002_RNA 26.2 rpmA 50S Ribosomal subunit protein L27 EG10671_RNA 30.1 ompF Outer membrane protein F EG50003_RNA 38.7 acpP Apo-[acyl carrier protein] EG10669_RNA 41.1 ompA Outer membrane protein A EG10873_RNA 44.7 rplL 50S Ribosomal subunit protein L7/L12 dimer EG12179_RNA 46.2 cspE Transcription antiterminator and regulator of RNA stability EG10321_RNA 53.2 fliC Flagellin EG10544_RNA 97.5 lpp Murein lipoprotein

ecoli.analysis.multigeneration.rna_decay_03_high.plot(params, conn, history_sql, config_sql, success_sql, sim_data_dict, validation_data_paths, outdir, variant_metadata, variant_names)

Plot dynamic traces of genes with high expression (> 20 counts of mRNA)

Parameters:

• params (dict[str, Any])

• conn (DuckDBPyConnection)

• history_sql (str)

• config_sql (str)

• success_sql (str)

• sim_data_dict (dict[str, dict[int, str]])

• validation_data_paths (list[str])

• outdir (str)

• variant_metadata (dict[str, dict[int, Any]])

• variant_names (dict[str, str])