ecoli.analysis.multiseed.subgenerational_expression_table

Generates a table of genes that are subgenerationally expressed, with their expression frequencies and average/maximum mRNA/protein counts.

ecoli.analysis.multiseed.subgenerational_expression_table.plot(params, conn, history_sql, config_sql, sim_data_dict, validation_data_paths, outdir, variant_metadata, variant_names)

Parameters:

• params (dict[str, Any])

• conn (DuckDBPyConnection)

• history_sql (str)

• config_sql (str)

• sim_data_dict (dict[str, dict[int, str]])

• validation_data_paths (list[str])

• outdir (str)

• variant_metadata (dict[str, dict[int, Any]])

• variant_names (dict[str, str])