ecoli.analysis.single.centralCarbonMetabolismScatter

Central Carbon Metabolism Flux comparison against Toya 2010 measured fluxes.

Scatter plot of mean simulated reaction fluxes (y-axis) vs. Toya 2010 experimentally measured fluxes (x-axis), with error bars on both axes and a Pearson R correlation in the title.

Ported from wcEcoli

ecoli.analysis.single.centralCarbonMetabolismScatter.plot(params, conn, history_sql, config_sql, success_sql, sim_data_paths, validation_data_paths, outdir, variant_metadata, variant_names)

Parameters:

• params (dict[str, Any]) – Unused; reserved for future parameters.

• conn (DuckDBPyConnection)

• history_sql (str)

• config_sql (str)

• success_sql (str)

• sim_data_paths (dict[str, dict[int, str]])

• validation_data_paths (list[str])

• outdir (str)

• variant_metadata (dict[str, dict[int, Any]])

• variant_names (dict[str, str])