reconstruction.ecoli.dataclasses.process.complexation
SimulationData for the Complexation process
- class reconstruction.ecoli.dataclasses.process.complexation.Complexation(raw_data, sim_data)[source]
Bases:
object
- _buildStoichMatrixMonomers()[source]
Builds a stoichiometric matrix where each column is a reaction that forms a complex directly from its constituent monomers. Since some reactions from the raw data are complexation reactions of complexes, this is different from the stoichiometric matrix generated by stoichMatrix().
- get_monomers(cplxId)[source]
Returns subunits for a complex (or any ID passed). If the ID passed is already a monomer returns the monomer ID again with a stoichiometric coefficient of one.
- mass_matrix()[source]
Builds a matrix with the same shape as the stoichiometric matrix, but with molecular masses as elements instead of stoichiometric constants
- exception reconstruction.ecoli.dataclasses.process.complexation.ComplexationError[source]
Bases:
Exception
- exception reconstruction.ecoli.dataclasses.process.complexation.MoleculeNotFoundError[source]
Bases:
ComplexationError