reconstruction.ecoli.dataclasses.state.internal_state
SimulationData state associated data
- class reconstruction.ecoli.dataclasses.state.internal_state.InternalState(raw_data, sim_data)[source]
Bases:
object
Internal State
- _build_bulk_molecule_specs(sim_data, molecule_ids)[source]
Builds a list of molecule IDs with compartment tags and a corresponding array of molecular masses to add to the bulk state. :param molecule_ids: List of molecule IDs w/o compartment tags :type molecule_ids: List[str]
- Returns:
- List of molecule IDs
with compartment tags
- masses (np.ndarray): Array of molecular masses divided into
submasses
- Return type:
molecule_ids_with_compartments (List[str])