ecoli.analysis.multiseed.protein_counts_validation

ecoli.analysis.multiseed.protein_counts_validation.plot(params, conn, history_sql, config_sql, success_sql, sim_data_paths, validation_data_paths, outdir, variant_metadata, variant_names)

Plot average monomer counts in simulation against Schmidt 2015 and Wisniewski 2014.

Parameters:

• params (dict[str, Any]) –

  Dictionary containing parameters of the format:

  {
      # Number of initial generations worth of data to skip
      "skip_n_gens": int
  }
  

• conn (DuckDBPyConnection)

• history_sql (str)

• config_sql (str)

• success_sql (str)

• sim_data_paths (dict[str, dict[int, str]])

• validation_data_paths (list[str])

• outdir (str)

• variant_metadata (dict[str, dict[int, Any]])

• variant_names (dict[str, str])