ecoli.analysis.multivariant.cell_mass

Plot absolue / normalized cell mass over time for multivariant simulation in vEcoli, and: 1. each variant has its own plot; 2. at each subplot, time is divided by generation id;

It can also be used at multigeneration analysis.

ecoli.analysis.multivariant.cell_mass.plot(params, conn, history_sql, config_sql, success_sql, sim_data_dict, validation_data_paths, outdir, variant_metadata, variant_names)

Parameters:

• params (dict[str, Any])

• conn (DuckDBPyConnection)

• history_sql (str)

• config_sql (str)

• success_sql (str)

• sim_data_dict (dict[str, dict[int, str]])

• validation_data_paths (list[str])

• outdir (str)

• variant_metadata (dict[str, dict[int, Any]])

• variant_names (dict[str, str])