ecoli.analysis.multivariant.centralCarbonMetabolismBoxScatter

Central Carbon Metabolism Flux comparison against Toya 2010 for multivariant simulation.

Scatter + boxplot overlay: X-axis = Toya 2010 flux; Y-axis = simulated flux. Fluxes are aggregated across all seeds and generations within each variant. One subplot per variant, faceted in a grid.

The user should verify what metabolism file was used in the simulations. metabolism_redux and metabolism_redux_classic outputs in counts and requires conversion to molar whereas original metabolism outputs in molar. The default is to assume redux simulations.

ecoli.analysis.multivariant.centralCarbonMetabolismBoxScatter.plot(params, conn, history_sql, config_sql, success_sql, sim_data_dict, validation_data_paths, outdir, variant_metadata, variant_names)

Parameters:

• params (dict[str, Any])

• conn (DuckDBPyConnection)

• history_sql (str)

• config_sql (str)

• success_sql (str)

• sim_data_dict (dict[str, dict[int, str]])

• validation_data_paths (list[str])

• outdir (str)

• variant_metadata (dict[str, dict[int, Any]])

• variant_names (dict[str, str])