ecoli.analysis.multivariant.enzyme_availability_flux

Plot enzyme availability (bulk counts) vs unmet homeostatic need over continuous simulation time for multivariant simulation.

One dual-y-axis Altair subplot per variant, stacked vertically. Within each variant, lines represent the mean over all cells on a continuous time axis (relative to the first timestep of each lineage seed); generation is used as the detail encoding to draw separate line segments at each cell division without resetting the time axis.

DISCLAIMER: This analysis is only meant for metabolism-redux and metabolism-redux-classic. metabolism.py lacks necessary listeners due to differences in problem formulation

ecoli.analysis.multivariant.enzyme_availability_flux.plot(params, conn, history_sql, config_sql, success_sql, sim_data_dict, validation_data_paths, outdir, variant_metadata, variant_names)

Plot mean enzyme counts and unmet need vs time, one subplot per variant.

Parameters:

• params (dict[str, Any])

• conn (DuckDBPyConnection)

• history_sql (str)

• config_sql (str)

• success_sql (str)

• sim_data_dict (dict[str, dict[int, str]])

• validation_data_paths (list[str])

• outdir (str)

• variant_metadata (dict[str, dict[int, Any]])

• variant_names (dict[str, str])

Return type:

None