ecoli.analysis.multivariant.kinetic_flux

Kinetic flux analysis for multivariant metabolism_redux_classic simulations.

Two rows of faceted subplots, one column per variant:

Top row: Scatter — per-reaction log10(avg kinetic target + ε) vs

log10(avg estimated kinetic flux + ε) in mmol/(L·h), with a dashed y=x reference line and Pearson R² / R²-to-y=x annotation.

Bottom row: Line — weighted kinetic objective term over continuous simulation

time, broken at cell division.

Variant panels are labeled with the fraction_kinetic_target value when available from variant_metadata.

ecoli.analysis.multivariant.kinetic_flux.plot(params, conn, history_sql, config_sql, success_sql, sim_data_dict, validation_data_paths, outdir, variant_metadata, variant_names)

Faceted scatter (log avg kinetic target vs log avg kinetic flux) and kinetic term over time, one column per variant.

Parameters:

• params (dict[str, Any])

• conn (DuckDBPyConnection)

• history_sql (str)

• config_sql (str)

• success_sql (str)

• sim_data_dict (dict[str, dict[int, str]])

• validation_data_paths (list[str])

• outdir (str)

• variant_metadata (dict[str, dict[int, Any]])

• variant_names (dict[str, str])

Return type:

None