ecoli.analysis.multivariant.metabolite_unmet_need

Plot unmet homeostatic need for metabolites for multivariant simulation.

For each variant, shows a bar chart of the top-N metabolites by mean |unmet need| and a timeseries of unmet need, aggregated across all cells in that variant. One bar+line subplot per variant, stacked vertically.

Configure the number of initial generations to exclude from the averages using the “skip_n_gens” key in the analysis params (defaults to 0).

ecoli.analysis.multivariant.metabolite_unmet_need._format_int_list(values)

Format a sorted list of ints compactly, collapsing contiguous runs for making the seed and generation labels in the title.

e.g. [0, 1, 2, 3] -> "0-3", [3, 5, 6, 7] -> "3, 5-7".

Parameters:

values (list[int])

Return type:

str

ecoli.analysis.multivariant.metabolite_unmet_need.plot(params, conn, history_sql, config_sql, success_sql, sim_data_dict, validation_data_paths, outdir, variant_metadata, variant_names)

One bar+line subplot per variant, aggregated across all cells in that variant.

Parameters:

• params (dict[str, Any])

• conn (DuckDBPyConnection)

• history_sql (str)

• config_sql (str)

• success_sql (str)

• sim_data_dict (dict[str, dict[int, str]])

• validation_data_paths (list[str])

• outdir (str)

• variant_metadata (dict[str, dict[int, Any]])

• variant_names (dict[str, str])

Return type:

None