reconstruction.ecoli.dataclasses.common_names
This class contains dictionaries of common names and synonyms of simulation elements in sim_data. Common names can be retrieved by calling get_common_names() and a list of synonyms can be retrieved by calling get_synonyms(). Both the common names and synonyms are gathered from relevant columns in raw data files.
- class reconstruction.ecoli.dataclasses.common_names.CommonNames(raw_data)[source]
Bases:
object
- get_common_name(element_id)[source]
Returns the common name of the simulation element with the given ID. If a common name does not exist, returns the original element ID.
- Parameters:
element_id (str) – ID of the simulation element
Returns: Common name of the given simulation element (str)
- get_synonyms(element_id)[source]
Returns a list of synonyms for the simulation element with the given ID. If a list of synonyms does not exist, returns a singleton list with the original element ID as the only entry.
- Parameters:
element_id (str) – ID of the simulation element
Returns: List of synonyms for the given simulation element (str)