ecoli.analysis.causality_network.buildCausalityNetwork

Builds causality network for a given variant of a given sim.

Run with ‘-h’ for command line help.

class ecoli.analysis.causality_network.buildCausalityNetwork.BuildCausalityNetwork

Bases: object

Builds and runs a causality network for a given sim.

define_parameters(parser)

description()

Describe the command line program. This defaults to the class name.

Return type:

str

help()

Return help text for the Command Line Interface. This defaults to a string constructed around self.description().

Return type:

str

parse_args()

Parse the command line args: Construct an ArgumentParser, call define_parameters() to define parameters including subclass-specific parameters, use it to parse the command line into an argparse.Namespace, and return that.

(A Namespace is an object with attributes and some methods like __repr__() and __eq__(). Call vars(args) to turn it into a dict.)

Return type:

Namespace

run(args)

ecoli.analysis.causality_network.buildCausalityNetwork.main()