ecoli.processes.rna_interference

RNA Interference

Treats sRNA-mRNA binding as complexation events that create duplexes and free bound ribosomes. Decreases ompF translation during micF overexpression.

class ecoli.processes.rna_interference.RnaInterference(parameters=None)

Bases: Process

defaults: Dict[str, Any] = {'binding_probs': [], 'duplex_ids': [], 'emit_unique': False, 'ribosome30S': 'ribosome30S', 'ribosome50S': 'ribosome50S', 'seed': 0, 'srna_ids': [], 'target_tu_ids': [], 'time_step': 2}

name = 'ecoli-rna-interference'

next_update(timestep, states)

ports_schema()

topology = {'RNAs': ('unique', 'RNA'), 'active_ribosome': ('unique', 'active_ribosome'), 'bulk': ('bulk',)}

ecoli.processes.rna_interference.main()