ecoli.processes.equilibrium

Equilibrium

This process models how ligands are bound to or unbound from their transcription factor binding partners in a fashion that maintains equilibrium.

class ecoli.processes.equilibrium.Equilibrium(parameters=None)

Bases: PartitionedProcess

Equilibrium PartitionedProcess

molecule_names: list of molecules that are being iterated over size:94

calculate_request(timestep, states)

defaults: Dict[str, Any]

{   'cell_density': 0.0,
    'complex_ids': [],
    'fluxesAndMoleculesToSS': <function Equilibrium.<lambda> at 0x7fc270e16e80>,
    'jit': False,
    'moleculeNames': [],
    'n_avogadro': 0.0,
    'reaction_ids': [],
    'seed': 0,
    'stoichMatrix': [[]]}

evolve_state(timestep, states)

name = 'ecoli-equilibrium'

ports_schema()

topology

{'bulk': ('bulk',), 'listeners': ('listeners',), 'timestep': ('timestep',)}