ecoli.processes.two_component_system

Two Component System

This process models the phosphotransfer reactions of signal transduction pathways.

Specifically, phosphate groups are transferred from histidine kinases to response regulators and back in response to counts of ligand stimulants.

class ecoli.processes.two_component_system.TwoComponentSystem(parameters)

Bases: PartitionedProcess

Two Component System PartitionedProcess

calculate_request(timestep, states)

defaults: Dict[str, Any]

{   'cell_density': 0.0,
    'jit': False,
    'moleculeNames': [],
    'moleculesToNextTimeStep': <function TwoComponentSystem.<lambda> at 0x7fc270e16f20>,
    'n_avogadro': 0.0,
    'seed': 0}

evolve_state(timestep, states)

name = 'ecoli-two-component-system'

ports_schema()

topology

{'bulk': ('bulk',), 'listeners': ('listeners',), 'timestep': ('timestep',)}