ecoli.processes.environment.reaction_diffusion_field
Reaction Diffusion Field
- class ecoli.processes.environment.reaction_diffusion_field.ReactionDiffusion(parameters=None)[source]
Bases:
Process
Reaction and Diffusion in 2-dimensional fields of molecules, with agent uptake and secretion at agent locations.
Parameters: TODO
-
defaults: Dict[str, Any]
{ 'bounds': [<Quantity(10, 'micrometer')>, <Quantity(10, 'micrometer')>], 'depth': <Quantity(3000.0, 'micrometer')>, 'diffusion': <Quantity(600.0, 'micrometer ** 2 / second')>, 'exchanges_path': ('boundary', 'exchanges'), 'external_path': ('boundary', 'external'), 'gradient': None, 'internal_time_step': 1, 'kinetic_parameters': {}, 'location_path': ('boundary', 'location'), 'molecules': [], 'n_bins': [10, 10], 'reactions': {}, 'time_step': 1}
- initial_state(config=None)[source]
sets uniform initial state at the concentration provided for each the molecule_id in config
- name = 'reaction_diffusion'
-
defaults: Dict[str, Any]